PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3882
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 243aa    MW: 25730.6 Da    PI: 9.0462
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3882genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002780102123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ykC+ C+k Fs+   L  H  +H
  Tp57577_TGAC_v2_mRNA3882  80 YKCSVCNKEFSSYQALGGHKASH 102
                               9***********99999998887 PP

2zf-C2H214.50.0001143165123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++C+ksF++   L  H r+H
  Tp57577_TGAC_v2_mRNA3882 143 HECSICHKSFPTGQALGGHKRRH 165
                               78*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.108.4E-46994IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF576671.02E-979102No hitNo description
SMARTSM003550.006180102IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-1380104IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.4580107IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SuperFamilySSF576671.02E-9138165No hitNo description
PROSITE profilePS501579.473143165IPR007087Zinc finger, C2H2
SMARTSM003550.039143165IPR015880Zinc finger, C2H2-like
PfamPF139125.9E-13143167IPR007087Zinc finger, C2H2
PROSITE patternPS000280145165IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MALEALNSPT STTPKFTFDD SPSLPWTKRK RSKRSRSCTE DEYLALCLIM LARGKTNAHD  60
FNPNPAVTTD NNNVNNKHSY KCSVCNKEFS SYQALGGHKA SHRKNSTTAA GTAGVDEQST  120
SSAATTTSSA NTAVGNGGGV RSHECSICHK SFPTGQALGG HKRRHYEGTV GGNGGGGGGS  180
AATTTVSEVG STHTRDFDLN IPAFPEFGNK VGEDEVESPH PVMIKKKPRV FVVPKIEIPI  240
LH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1405481e-72AC140548.11 Medicago truncatula clone mth2-12n15, complete sequence.
GenBankAY2581401e-72AY258140.1 Medicago truncatula zinc finger protein mRNA, complete cds.
GenBankBT0517751e-72BT051775.1 Medicago truncatula clone MTYF5_F6_F7_F81G-D-8 unknown mRNA.
GenBankBT1428051e-72BT142805.1 Medicago truncatula clone JCVI-FLMt-1E7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589096.11e-108C2H2-type zinc finger protein
SwissprotQ962899e-56ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLQ53EI91e-108Q53EI9_MEDTR; C2H2-type zinc finger protein
STRINGGLYMA17G35430.19e-80(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-44salt tolerance zinc finger